Utilizing environmental DNA metabarcoding and local ecological knowledge for fish biodiversity assessment in Rivers of Java, Indonesia | Knowledge and Management of Aquatic Ecosystems

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Table 2

Checklist of freshwater fish based on eDNA and local ecological knowledge surveys and fishers' perceptions concerning population status in eight rivers.

Species	Common name	Detected in	LEK survey status
Ambassis urotaenia ^LC	Banded-tail glassy perch	Cisadane^A,C	Declining
Ambassis vachellii ^LC	Vachell's Glassfish	Citarum^A	Unknown
Anabas testudineus^LC	Climbing perch	Cisadane^A,B; Cimanuk^C	Declining
Atherinomorus lacunosus ^LC	Wide-banded hardyhead silverside	Cisadane^A	Unknown
Barbodes binotatus ^LC	Spotted barb	Citarum^A,B,C; Cimanuk^C; Cipunagara^A,B; Kalibabadan^A,B; Sragi^A,B	Declining
Barbodes schwanenfeldii ^LC	Tinfoil barb	Cipunagara^B; Sragi^B	Declining
Barbonymus gonionotus ^LC	Silver barb	Cisadane^A,B,C; Kalimalang^A,B; Citarum^A,B; Ciliwung^A,B; Cimanuk^C; Cipunagara^A,B; Kalibabadan^A,B, Sragi^A,B	Declining
*Barbonymus balleroides ^LC	Barb	Citarum^B: Cimanuk^C; Cipunagara^B; Sragi^B	Declining
Channa striata ^LC	Striped snakehead	Cisadane^A,B; Kalimalang^A,B; Citarum^A,B,C; Ciliwung^A,B,C; Cimanuk^C; Cipunagara^A,B; Kalibabadan^A,B, Sragi^A,B	Declining
Chitala lopis ^EX	Giant featherback	Cisadane^B	Declining
Clarias gariepinus ^LC	African catfish	Cisadane^A,B,C; Kalimalang^A,B; Citarum^A,B; Ciliwung^A,B,C; Cimanuk^A,B; Cipunagara^A,B; Kalibabadan^A,B, Sragi^A,B	Often caught by fishermen
Clarias batrachus ^LC	Asian catfish	Citarum^C; Ciliwung^C; Cimanuk^A,C	Declining
*Crenimugil seheli ^LC	Bluespot mullet	Kalibabadan^B	Often caught by fishermen
Cyclocheilichthys apogon ^LC	Beardless barb	Cimanuk^A	Declining
Cyprinus carpio ^LC	Common carp	Cisadane^B; Citarum^B; Cimanuk^C; Cipunagara^B; Sragi^B	Often caught by fishermen
Dermogenys sp. ^LC	Wrestling halfbeak	Cisadane^C; Citarum^A,C; Ciliwung^C; Cimanuk^C	Unknown
Gagata dolichonema ^LC	Sisorid catfish	Citarum^A	Unknown
Glossilepis incisus ^EN	Red rainbowfish	Cimanuk^A	Declining
Glossogobius sp. ^LC	Goby	Cisadane^C; Citarum^A; Cimanuk^C	Unknown
Hemibagrus nemurus^LC	Asian redtail catfish	Cisadane^A,B,C; Citarum^A,B; Ciliwung^A,B,C; Cipunagara^A,B; Sragi^A,B	Declining
Leiopotherapon plumbeus ^VU	Silver perch	Citarum^A	Unknown
*Macrognathus sp. ^LC	Lesser spiny eel	Kalimalang^B; Citarum^C	Declining
Mastacembelus erythrotaenia. ^LC	Spiny eel	Citarum^A,B	Declining
Megalops sp. ^LC	Indo-Pacific tarpon	Ciliwung^B	Declining
Monopterus albus^LC	Asian swamp eel	Cisadane^B; Cimanuk^C	Declining
Mystus sp. ^LC	Bagrid catfish	Cisadane^A,B; Citarum^A,B,C; Ciliwung^A,B; Cimanuk^C; Cipunagara^A,B; Sragi^A,B	Declining
*Nemacheilus fasciatus ^LC	Barred loach	Citarum^B; Sragi^B	Declining
Nemacheilus selangoricus ^LC	Grey-banded loach	Citarum^A	Unknown
Netuma bilineata ^NE	Bronze catfish	Cimanuk^A	Declining
Notopterus notopterus ^LC	Bronze featherback	Cisadane^B; Kalimalang^B; Citarum^B,C; Ciliwung^B; Cimanuk^B; Cipunagara^B; Sragi^B	Declining
*Ompok miostoma ^LC	Sheatfish	Citarum^B; Kalibabadan^B	Declining
Oreochromis mossambicus ^LC	Mozambique Tilapia	Cisadane^B; Kalimalang^B; Citarum^B,C; Ciliwung^B; Cimanuk^B,C; Cipunagara^B; Kalibabadan^B, Sragi^B	Often caught by fishermen
Oreochromis niloticus ^LC	Nile tilapia	Cisadane^A,B,C; Kalimalang^A,B; Citarum^A,B,C; Ciliwung^A,B,C; Cimanuk^C; Cipunagara^A,B; Kalibabadan^A,B; Sragi^A,B	Often caught by fishermen
Oreochromis sp. ^LC	Tilapia	Citarum^A	Unknown
*Osteochilus vittatus ^LC	Bonylip barb	Cisadane^B; Kalimalang^B; Citarum^B; Ciliwung^B; Cimanuk^B; Cipunagara^B; Sragi^B	Declining
Osphronemus goramy ^LC	Giant gourami	Cisadane^B; Citarum^C; Cipunagara^B; Sragi^B	Often caught by fishermen
Oryzias sp. ^LC	Ricefish	Cisadane^C; Cimanuk^A;	Declining
Oxyeleotris marmorata ^LC	Marbled goby	Cisadane^C; Citarum^C; Cimanuk^C; Cipunagara^B	Declining
Pangasianodon hypophthalmus ^LC	Striped catfish	Cisadane^B; Kalimalang^B; Citarum^B,C; Cimanuk^B; Kalibabadan^B; Sragi^B	Often caught by fishermen
Parambassis ranga ^LC	Indian glassy fish	Cimanuk^A	Unknown
Planiliza macrolepis ^LC	Largescale mullet	Cimanuk^A	Declining
Planiliza sp. ^LC	Mullet	Kalimalang^A; Cimanuk^C	Unknown
Pterygoplichthys disjunctivus ^LC	Vermiculated sailfin catfish	Ciliwung^A,B	Often caught by fishermen
Rachycentron canadum ^LC	Cobia	Cimanuk^A	Unknown
Rasbora argyrotaenia ^LC	Indonesian rasbora	Citarum^A,B; Cimanuk^C	Declining
Scatophagus argus ^LC	Spotted scat	Citarum^A; Cimanuk^C	Unknown
*Tor sp. ^DD	Mahseer	Cisadane^C; Citarum^C; Cimanuk^C; Cipunagara^B	Declining
Trichogaster pectoralis ^LC	Snakeskin gourami	Cisadane^B; Citarum^B,C; Cipunagara^B; Kalibabadan^B	Often caught by fishermen
Trichopsis vittata ^LC	Croaking gourami	Cimanuk^A	Unknown
Trichopodus microlepis ^LC	Moonlight gourami	Cimanuk^A	Unknown

Description: A = eDNA, B = LEK, C = Historical Data. IUCN status: DD = Data Deficient, LC = Least Concern, NE = Not Evaluated, VU = Vulnerable, EN = Endangered, EX = Extinct Species in bold are non-native. Asterisk (*) indicates the species are not available in MiFish database.

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