Issue
Knowl. Manag. Aquat. Ecosyst.
Number 421, 2020
Topical Issue on Fish Ecology
Article Number 27
Number of page(s) 12
DOI https://doi.org/10.1051/kmae/2020019
Published online 24 June 2020
  • Barbieri R, Vukić J, Šanda R, Kapakos Y, Zogaris S. 2017. Alburnoides economoui, a new species of spirlin from Central Greece and redescription of Alburnoides thessalicus (Actinopterygii: Cyprinidae). Biologia 72: 1075–1088. [Google Scholar]
  • Barbieri R, Zogaris S, Kalogianni E, Stoumboudi MT, Chatzinikolaou Y, Giakoumi S, Kapakos Y, Kommatas D, Koutsikos N, Tachos V, Vardakas L, Economou AN. 2015. Freshwater fishes and Lampreys of Greece: An annotated checklist. Monographs on Marine Sciences No. 8, Hellenic Centre for Marine Research, Athens, Greece, 136 p. [Google Scholar]
  • Benovics M, Desdevises Y, Šanda R, Vukić J, Šimková A. 2020. Cophylogenetic relationships between Dactylogyrus (Monogenea) ectoparasites and endemic cyprinoids of the north-eastern European peri-Mediterranean region. J Zool Syst Evol Res 58: 1–21. [Google Scholar]
  • Bianco PG, Nordlie F. 2008. The salinity tolerance of Pseudophoxinus stymphalicus (Cyprinidae) and Valencia letourneuxi (Valenciidae) from western Greece suggests a revision of the ecological categories of freshwater fishes. Ital J Zool 75: 285–293. [CrossRef] [Google Scholar]
  • Buj I, Ćaleta M, Marčić Z, Šanda R, Vukić J, Mrakovčić M. 2015. Different histories, different destinies-impact of evolutionary history and population genetic structure on extinction risk of the Adriatic spined loaches (genus Cobitis; Cypriniformes, Actinopterygii). PLoS ONE 10: e0131580. [CrossRef] [PubMed] [Google Scholar]
  • Buj I, Marčić Z, Ćaleta M, Šanda R, Geiger MF, Freyhof J, Vukić J. 2017. Ancient connections among the European rivers and watersheds revealed from the evolutionary history of the genus Telestes (Actinopterygii; Cypriniformes). PloS ONE 12: e0187366. [CrossRef] [PubMed] [Google Scholar]
  • Buj I, Šanda R, Zogaris S, Freyhof J, Geiger MF, Vukić J. 2019. Cryptic diversity in Telestes pleurobipunctatus (Actinopterygii; Leuciscidae) as a consequence of historical biogeography in the Ionian Freshwater Ecoregion (Greece, Albania). Hydrobiologia 835: 147–163. [Google Scholar]
  • Buj I, Vukić J, Šanda R, Perea S, Ćaleta M, Marčić Z, Bogut I, Povž M, Mrakovčić M. 2010. Morphological comparison of bleaks (Alburnus, Cyprinidae) from the Adriatic Basin with the description of a new species. Folia Zool 59: 129–141. [CrossRef] [Google Scholar]
  • Clement M, Posada D, Crandall KA. 2000. TCS: A computer program to estimate gene genealogies. Mol Ecol 9: 1657–1659. [CrossRef] [PubMed] [Google Scholar]
  • Collen B, Whitton F, Dyer EE, Baillie JEM, Cumberlidge N, Darwall WRT, Pollock C, Richman NI, Soulsby AM, Böhm M. 2014. Global patterns of freshwater species diversity, threat and endemism. Glob Ecol Biogeogr 23: 40–51. [CrossRef] [PubMed] [Google Scholar]
  • Darriba D, Taboada GL, Doallo R, Posada, D. 2012. jModelTest 2: more models, new heuristics and parallel computing. Nat Methods 9: 772–772. [Google Scholar]
  • Drummond AJ, Rambaut A. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7: 214. [CrossRef] [PubMed] [Google Scholar]
  • Drummond AJ, Rambaut A, Shapiro B, Pybus OG. 2005. Bayesian coalescent inference of past population dynamics from molecular sequences. Mol Biol Evol 22: 1185–1192. [CrossRef] [PubMed] [Google Scholar]
  • Drummond AJ, Suchard MA, Xie D, Rambaut A. 2012. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol 29: 1969–1973. [CrossRef] [PubMed] [Google Scholar]
  • Durand JD, Templeton AR, Guinand B, Imsiridou A, Bouvet Y. 1999. Nested clade and phylogeographic analyses of the chub, Leuciscus cephalus (Teleostei, Cyprinidae), in Greece: implications for Balkan Peninsula biogeography. Mol Phylogenet Evol 13: 566–580. [Google Scholar]
  • Economidis PS. 2009. Fishes of inland waters. In Legakis A, Maragou P, eds. Red Data Book of Threatened Animals of Greece, Hellenic Zoological Society, Athens, 86–159. (In Greek). [Google Scholar]
  • Economou AN. 2000. Pseudophoxinus stymphalicus: a “successful” fish species of the freshwaters of Greece, 9th Panhellenic Ichthyological Congress, Messolonghi, 20-23 January 2000, 169–172. (In Greek). [Google Scholar]
  • Economou AN, Barbieri R, Daoulas CH, Psarras T, Stoumboudi M, Bertahas I, Giakoumi S, Patsias A. 1999. Endangered freshwater fish of western Greece and the Peloponnese − measures for protection. Final Technical Report, National Centre for Marine Research, 341 p. (In Greek). [Google Scholar]
  • Economou AN, Giakoumi S, Vardakas L, Barbieri R, Stoumboudi M, Zogaris S. 2007. The freshwater ichthyofauna of Greece: An update based on a hydrographic basin survey. Mediterr Mar Sci 8: 91–168. [CrossRef] [Google Scholar]
  • Economou AN, Zogaris S, Vardakas L, Koutsikos N, Chatzinikolaou Y, Kommatas D, Kapakos Y, Giakoumi S, Oikonomou E, Tachos V. 2016. Developing policy-relevant river fish monitoring in Greece: Insights from a nation-wide survey. Mediterr Mar Sci 17: 302–322. [CrossRef] [Google Scholar]
  • Excoffier L, Lischer HEL. 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10: 564–567. [Google Scholar]
  • Freyhof J, Kärst H, Geiger M. 2014. Valencia robertae, a new killifish from southern Greece (Cyprinodontiformes: Valenciidae). Ichthyol Explor Freshw 24: 289–298. [Google Scholar]
  • Freyhof J, Lieckfeldt D, Bogutskaya NG, Pitrab C, Ludwig A. 2006. Phylogenetic position of the Dalmatian genus Phoxinellus and description of the newly proposed genus Delminichthys (Teleostei: Cyprinidae). Mol Phylogenet Evol 38: 416–425. [Google Scholar]
  • Geiger MF, Herder F, Monaghan MT, Almada V, Barbieri R, Bariche M, Berrebi P, Bohlen J, Casal-Lopez M, Delmastro GB, Denys GPJ, Dettai A, Doadrio I, Kalogianni E, Kärst H, Kottelat M, Kovačić M, Laporte M, Lorenzoni M, Marčić Z, Özuluğ M, Perdices A, Perea S, Persat H, Porcelotti S, Puzzi C, Robalo J, Šanda R, Scheneider M, Šlechtová V, Stoumboudi M, Walter S, Freyhof J. 2014. Spatial heterogeneity in the Mediterranean biodiversity hotspot affects barcoding accuracy of its freshwater fishes. Mol Ecol Resour 14: 1210–1221. [Google Scholar]
  • Hall T. 1999. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41: 95–98. [Google Scholar]
  • Jombart T. 2008. adegenet: a R package for the multivariate analysis of genetic markers. Bioinformatics 24: 1403–1405. [CrossRef] [PubMed] [Google Scholar]
  • Kalogianni E, Koutsikos N, Vardakas L, Giakoumi S, Chatzinikolaou Y, Oikonomou A. 2019. Impacts of the alien mosquitofish on the abundance and condition of two Mediterranean native fish. Mediterr Mar Sci 20: 727–735. [CrossRef] [Google Scholar]
  • Ketmaier V, Bianco PG, Cobolli M, Krivokapić M, Coniglia R, De Matthaeis E. 2004. Molecular phylogeny of two lineages of Leuciscinae cyprinids (Telestes and Scardinius) from the peri-Mediterranean area based on cytochrome b data. Mol Phylogenet Evol 32: 1061–1071. [Google Scholar]
  • Ketmaier V, Bianco PG, Durand JD. 2008. Molecular systematics, phylogeny and biogeography of roaches (Rutilus, Teleostei, Cyprinidae). Mol Phylogenet Evol 49: 362–367. [Google Scholar]
  • Kokkoris IP, Bekri ES, Skuras D, Vlami V, Zogaris S, Maroulis G, Dimopoulos D, Dimopoulos P. 2019. Integrating MAES implementation into protected area management under climate change: A fine-scale application in Greece. Sci Total Environ 695: 133530. [CrossRef] [PubMed] [Google Scholar]
  • Kottelat M, Barbieri R. 2004. Pseudophoxinus laconicus, a new species of minnow from Peloponnese, Greece, with comments on the West Balkan Pseudophoxinus species (Teleostei: Cyprinidae). Ichthyol Explor Freshw 15: 147–160. [Google Scholar]
  • Kottelat M, Freyhof J. 2007. Handbook of European freshwater fishes. Kottelat, Cornol and Freyhof, Berlin, 646 p. [Google Scholar]
  • Koutsikos N, Zogaris S, Vardakas L, Tachos V, Kalogianni E, Šanda R, Chatzinikolaou Y, Giakoumi S, Economidis PS, Economou AN. 2012. Recent contributions to the distribution of the freshwater ichthyofauna in Greece. Mediterr Mar Sci 13: 268–277. [CrossRef] [Google Scholar]
  • Koutsikos N, Zogaris S, Vardakas L, Kalantzi OI, Dimitriou E, Economou AN. 2019. Tracking non-indigenous fishes in lotic ecosystems: Invasive patterns at different spatial scales in Greece. Sci Total Environ 659: 384–400. [CrossRef] [PubMed] [Google Scholar]
  • Kumar S, Stecher G, Tamura K. 2016. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 33: 1870–1874. [CrossRef] [PubMed] [Google Scholar]
  • Machordom A, Doadrio I. 2001. Evidence of a Cenozoic Betic-Kabilian connection based on freshwater fish phylogeography (Luciobarbus, Cyprinidae). Mol Phylogenet Evol 18: 252–263. [Google Scholar]
  • Oikonomou A, Leprieur F, Leonardos ID. 2014. Biogeography of freshwater fishes of the Balkan Peninsula. Hydrobiologia 738: 205–220. [Google Scholar]
  • Pascual M, Rives B, Schunter C, Macpherson E. 2017. Impact of life history traits on gene flow: a multispecies systematic review across oceanographic barriers in the Mediterranean Sea. PLoS ONE 12: e0176419. [CrossRef] [PubMed] [Google Scholar]
  • Perea S, Bohme M, Zupančič P, Freyhof J, Šanda R, Özuluğ M, Abdoli A, Doadrio I. 2010. Phylogenetic relationships and biogeographical patterns in Circum-Mediterranean subfamily Leuciscinae (Teleostei, Cyprinidae) inferred from both mitochondrial and nuclear data. BMC Evol Biol 10: 1–27. [CrossRef] [PubMed] [Google Scholar]
  • Perea S, Vukić J, Šanda R, Doadrio I. 2016. Ancient mitochondrial capture as factor promoting mitonuclear discordance in freshwater fishes: A case study in the genus Squalius (Actinopterygii, Cyprinidae) in Greece. PloS ONE 11: e0166292. [CrossRef] [PubMed] [Google Scholar]
  • Perissoratis C, Conispoliatis N. 2003. The impacts of sea-level changes during latest Pleistocene and Holocene times on the morphology of the Ionian and Aegean seas (SE Alpine Europe). Mar Geol 196: 145–156. [Google Scholar]
  • Rambaut A, Drummond AJ, Xie D, Baele G, Suchard MA. 2018. Posterior summarization in Bayesian phylogenetics using Tracer 1.7. Syst Biol 67: 901–904. [CrossRef] [PubMed] [Google Scholar]
  • Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol 61: 539–542. [CrossRef] [PubMed] [Google Scholar]
  • Rozas J, Ferrer-Mata A, Sánchez-DelBarrio JC, Guirao-Rico S, Librado P, Ramos-Onsins SE, Sánchez-Gracia A. 2017. DnaSP 6: DNA sequence polymorphism analysis of large datasets. Mol Biol Evol 34: 3299–3302. [CrossRef] [PubMed] [Google Scholar]
  • Šanda R, Vukić J, Choleva L, Křížek J, Šedivá A, Shumka S, Wilson IF. 2008. Distribution of loach fishes (Cobitidae, Nemacheilidae) in Albania, with genetic analysis of populations of Cobitis ohridana . Folia Zool 57: 42–50. [Google Scholar]
  • Santos AM, Cabezas MP, Tavares AI, Xavier R, Branco M, 2016. tcsBU: a tool to extend TCS network layout and visualization. Bioinformatics 32: 627–628. [CrossRef] [PubMed] [Google Scholar]
  • Schönhuth S, Vukić J, Šanda R, Yang L, Mayden RL. 2018. Phylogenetic relationships and classification of the Holarctic family Leuciscidae (Cypriniformes: Cyprinoidei). Mol Phylogenet Evol 127: 781–799. [Google Scholar]
  • Templeton AR, Crandall KA, Sing CF. 1992. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics 132: 619–633. [PubMed] [Google Scholar]
  • Towner P. 1991. Purification of DNA. In : Brown T. ed. Essential molecular biology, a practical approach, Oxford University Press, Oxford, 47–68. [Google Scholar]
  • Tsigenopoulos CS, Berrebi P. 2000. Molecular phylogeny of north Mediterranean freshwater barbs (genus Barbus: Cyprinidae) inferred from cytochrome b sequences: biogeographic and systematic implications. Mol Phylogenet Evol 14: 165–179. [Google Scholar]
  • Vanhove MPM, Kovačić M, Zogaris S. 2016. A distinct island population of threatened freshwater fish: To split or lump? Hydrobiologia 777: 79–93. [Google Scholar]
  • Vavalidis T, Zogaris S, Economou AN, Kallimanis AS, Bobori DC. 2019. Changes in fish taxonomy affect freshwater biogeographical regionalisations: insights from Greece. Water 11: 1743. [Google Scholar]
  • Vogiatzi E, Kalogianni E, Zimmerman B, Giakoumi S, Barbieri R, Paschou P, Magoulas A, Tsaparis D, Poulakakis N, Tsigenopoulos CS. 2014. Reduced variation and strong genetic population structure in the freshwater killifish Valencia letourneuxi (Valenciidae) based on nuclear and mitochondrial markers. Biol J Linn Soc Lond 111: 334–349. [Google Scholar]
  • Vukić J, Kovačić M, Zogaris S, Šanda R. 2016. Rediscovery of Knipowitschia goerneri and its molecular relationships with other European northern Mediterranean Knipowitschia species (Teleostei: Gobiidae). Ichthyol Explor Freshw 26: 363–372. [Google Scholar]
  • Vukić J, Ulqini D, Šanda R. 2017. Occurrence of Knipowitschia goerneri Ahnelt, 1991 (Gobiidae) in southern Albania confirmed with molecular tools. J Appl Ichthyol 33: 284–290. [Google Scholar]
  • Yang L, Sado T, Hirt MV, Pasco-Viel E, Arunachalam M, Li J, Wang X, Freyhof J, Saitoh K, Simons AM, Miya M, He S, Mayden RL. 2015. Phylogeny and polyploidy: resolving the classification of cyprinine fishes (Teleostei: Cypriniformes). Mol Phylogenet Evol 85: 97–116. [Google Scholar]
  • Zardoya R, Doadrio I. 1999. Molecular evidence on the evolutionary and biogeographical patterns of European cyprinids. J Mol Evol 49: 227–237. [CrossRef] [PubMed] [Google Scholar]
  • Zogaris S, Economou A, Dimopoulos P. 2009. Ecoregions in the Southern Balkans: should they be revised? J Environ Manage 43: 682–697. [Google Scholar]
  • Zogaris S, Economou AN. 2017. The biogeographic characteristics of the river basins of Greece. In Skoulidikis N, Dimitriou E, Karaouzas I, eds. The rivers of Greece, Springer, Berlin, Heidelberg, 53–95. [CrossRef] [Google Scholar]
  • Zogaris S, Tachos V, Economou AN, Chatzinikolaou Y, Koutsikos N, Schmutz S. 2018. A model-based fish bioassessment index for Eastern Mediterranean rivers: Application in a biogeographically diverse area. Sci Total Environ 622: 676–689. [CrossRef] [PubMed] [Google Scholar]

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