Appendix 1

Distribution of haplotypes ATcs1, 2, 3 and 4.

Haplotype Accession number Distribution − country/drainages
ATcs1 AF273086 1Denmark (Skals), Norway (Bjornes Lake, Sima), Spain (hatchery stocks), 2Spain (Garona), France (Gulf of Biscay), Iceland (Skorradalsvatn), British Isles (Coquet, Wear, Lune and Melvin), 3Czech (Elbe and Oder), Slovakia (Vistula)
ATcs2 AF273087 1Denmark (Skals and Karup), Norway (Guddal and Sima), Spain (hatchery stocks), 2France (Gulf of Biscay), 2British Isles (Coquet, Stour, Rother, Fowey, Teifi, Conwy, Loch Romoch), 2Russia (Nilima and Vorobiev), 3Czech (Elbe and Oder), Slovakia (Vistula)
ATcs3 AF274574 1Denmark (Skals), Norway (Bjornes Lake, Guddal and Sima), Spain (hatchery stocks), 2Spain (Garona), France (Gulf of Biscay), British Isles (Coquet, Wear, Rother, Teifi, Conwy, Melvin), 3Czech (Elbe and Oder), Slovakia (Vistula)
ATcs4 AF274575 1Denmark (Skals and Karup), Norway (Bjornes Lake, Guddal and Sima), Spain (hatchery stocks), 2France (Gulf of Biscay), British Isles (Lune)
1

Cortey, M., & García-Marín, J.-L. (2002). Evidence for phylogeographically informative sequence variation in the mitochondrial control region of Atlantic brown trout. Journal of Fish Biology, 60, 1058–1063.

2

Cortey, M., Vera, M., Pla, C., & Garcia-Marin, J.L. (2009). Northern and Southern expansions of Atlantic brown trout (Salmo trutta) populations during the Pleistocene. Biolocial Journal of Linnean Society, 97, 904–917.

3

Kohout, J., Jaskova, I., Papousek, I., Sediva, A., & Slechta, V. (2012). Effects of stocking on the genetic structure of brown trout, Salmo trutta, in Central Europe inferred from mitochondrial and nuclear DNA markers. Fisheries Management and Ecology, 19, 252–263.

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