Table 4
Variable base positions among the three haplotypes of the n = 11 specimens based upon 946 bp of the mtDNA CR and additionally a 285 bp segment of the 3' end of haplotype At1 (328 bp; acc. no. M97968; Bernatchez et al., 1992). Nucleotide positions are numbered according to the reference sequence ‘haplotype 2’ (AF273087; Cortey and Garcia-Marin, 2002). Identity with the reference sequence is indicated with . and indels are marked with −. Number (N) and relative frequency (Freq.) of each haplotype is given.
| Haplotype name† | Variable sites | N | Freq. | ||||
|---|---|---|---|---|---|---|---|
| 527 | 714 | 731‡ | 750§ | 935 | |||
| AT-s1|At1|H2|At1b | C | C | C | A | A | 8 | 0.73 |
| AT-s1|At1|H3|At1d | . | . | . | . | C | 2 | 0.18 |
| AT-s1|At1|–|At1q | T | . | . | . | . | 1 | 0.09 |
| At1 − 3' end | A | – | – | C | |||
†The haplotype names are composed of the haplotype names of the reference sequences and separated by |, as follows: Bernatchez et al. (1992) and Bernatchez (2001) | Weiss et al. (2001) | Cortey and Garcia-Marin (2002) | Duftner et al. (2003) and this study.
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