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Table 4

Variable base positions among the three haplotypes of the n = 11 specimens based upon 946 bp of the mtDNA CR and additionally a 285 bp segment of the 3' end of haplotype At1 (328 bp; acc. no. M97968; Bernatchez et al., 1992). Nucleotide positions are numbered according to the reference sequence ‘haplotype 2’ (AF273087; Cortey and Garcia-Marin, 2002). Identity with the reference sequence is indicated with . and indels are marked with −. Number (N) and relative frequency (Freq.) of each haplotype is given.

Haplotype name† Variable sites N Freq.

  527 714 731‡ 750§ 935    
AT-s1|At1|H2|At1b C C C A A 8 0.73
AT-s1|At1|H3|At1d . . . . C 2 0.18
AT-s1|At1|–|At1q T . . . . 1 0.09
At1 − 3' end   A C    

†The haplotype names are composed of the haplotype names of the reference sequences and separated by |, as follows: Bernatchez et al. (1992) and Bernatchez (2001) | Weiss et al. (2001) | Cortey and Garcia-Marin (2002) | Duftner et al. (2003) and this study.

‡Position 731 is followed by another three cytosine nucleotides in haplotypes At1b, At1d and At1q.

§Position 750 is followed by two more adenine nucleotides in haplotypes At1b, At1d and At1q.

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