Table 1

The number of base substitutions per site from estimation of net average between sequence groups using the Tamura-Nei model with a gamma-distributed rate variation among sites (Tamura and Nei, 1993). Values are shown as percentage. Sequence groups correspond to clades and lineages in Phoxinus lumaireul. Standard error estimates are shown above the diagonal.

Clades and lineages 1 2 3 4 5 6 7 8 9 10 11 12
1. Clade 1a Lineage HR 0.3 0.3 0.4 0.3 0.5 0.4 0.6 0.5 0.6 0.6 0.6
2. Clade 1a Lineage SI/HR 1.2 0.3 0.4 0.2 0.5 0.4 0.5 0.4 0.5 0.5 0.6
3. Clade 1a Lineage IT1 0.9 1 0.4 0.3 0.5 0.5 0.6 0.5 0.6 0.5 0.6
4. Clade 1a Lineage IT2 1.4 1.4 1.6 0.4 0.5 0.5 0.5 0.5 0.5 0.5 0.7
5. Clade 1a Lineage IT3 1.1 0.6 0.9 1.3 0.4 0.4 0.5 0.4 0.5 0.5 0.6
6. Clade 1b Lineage HR/BA 2.5 2.2 2.4 2.5 2.1 0.3 0.5 0.4 0.6 0.5 0.6
7. Clade 1b Lineage HR/SI/BA 2.1 2 2.1 2.5 1.9 0.9 0.5 0.4 0.6 0.5 0.6
8. Clade 1c Lineage SI 2.8 2.3 2.8 2.7 2.5 2.2 2.6 0.4 0.6 0.5 0.6
9. Clade 1c Lineage SI/HR 2.3 1.8 2.3 2.3 1.9 2 2 1.9 0.5 0.4 0.6
10. Clade 1d 3.1 2.8 3.2 3.1 2.9 3.1 3.1 3.1 2.6 0.4 0.4
11. Clade 1e 3.5 3 3.4 3.6 3.1 3.2 3 3.7 2.6 2.4 0.5
12. Clade 1f 3.5 3.3 3.5 4.1 3.3 3.9 3.5 3.4 3.2 2.4 2.6

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